PoplarV1, Main, Exploration, bibRecord, 002D90

Molecular cloning and characterization of GhAPm, a gene encoding the μ subunit of the clathrin-associated adaptor protein complex that is associated with cotton (Gossypium hirsutum) fiber development.

Identifieur interne : 002D90 ( Main/Exploration ); précédent : 002D89; suivant : 002D91

Molecular cloning and characterization of GhAPm, a gene encoding the μ subunit of the clathrin-associated adaptor protein complex that is associated with cotton (Gossypium hirsutum) fiber development.

Auteurs : Tao Zhou [République populaire de Chine] ; Rui Zhang ; Dawei Yang ; Sandui Guo

Source :

Molecular biology reports [ 1573-4978 ] ; 2011.

RBID : pubmed:21225463

Descripteurs français

English descriptors

KwdEn :
- Adaptor Proteins, Vesicular Transport (chemistry), Adaptor Proteins, Vesicular Transport (genetics), Adaptor Proteins, Vesicular Transport (metabolism), Amino Acid Sequence (MeSH), Base Sequence (MeSH), Cloning, Molecular (MeSH), Gene Expression Regulation, Plant (MeSH), Gossypium (anatomy & histology), Gossypium (chemistry), Gossypium (genetics), Gossypium (growth & development), Models, Molecular (MeSH), Molecular Sequence Data (MeSH), Plant Proteins (chemistry), Plant Proteins (classification), Plant Proteins (genetics), Plant Proteins (metabolism), Protein Structure, Tertiary (MeSH), Protein Subunits (chemistry), Protein Subunits (classification), Protein Subunits (genetics), Protein Subunits (metabolism), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH).
MESH :
- chemical , chemistry : Adaptor Proteins, Vesicular Transport, Plant Proteins, Protein Subunits.
- chemical , classification : Plant Proteins, Protein Subunits.
- chemical , genetics : Adaptor Proteins, Vesicular Transport, Plant Proteins, Protein Subunits.
- chemical , metabolism : Adaptor Proteins, Vesicular Transport, Plant Proteins, Protein Subunits.
- anatomy & histology : Gossypium.
- chemistry : Gossypium.
- genetics : Gossypium.
- growth & development : Gossypium.
- Amino Acid Sequence, Base Sequence, Cloning, Molecular, Gene Expression Regulation, Plant, Models, Molecular, Molecular Sequence Data, Protein Structure, Tertiary, Sequence Alignment, Sequence Analysis, DNA.

Abstract

The clathrin-associated adaptor protein (AP) complexes are the primary clathrin adaptors that contribute to the formation of clathrin-coated vesicles (CCVs). The GhAPm gene (GenBank accession number: GU359054), which encodes the medium subunit of the AP complexes, was cloned from cotton by rapid amplification of cDNA ends-polymerase chain reaction (RACE-PCR). The full-length cDNA was 1590 bp in size and encoded an open reading frame (ORF) of 416 amino acids with a molecular weight of 46 kDa. The GhAPm protein shared 81-85% identity at the amino acid level with the AP complex μ subunits isolated from Vitis vinifera, Glycine max, Populus trichocarpa, Ricinus communis and Arabidopsis thaliana, respectively. The corresponding genomic DNA, containing eight exons and seven introns, was isolated and analyzed. Also, a 5'-flanking region was analyzed, and a group of putative cis-acting elements were identified. DNA gel blot analysis showed that there is only one GhAPm gene in the cotton genome. Real-time RT-PCR analysis revealed that GhAPm is expressed in the root, stem, leaf, petal, ovule, and fiber. However, the interesting finding is that GhAPm expression level was shown to increase steadily as the cotton fiber develops. In 30 DPA fibers, expression increases sharply and arrives at a peak then the expression levels decrease rapidly. Based on these data, we propose that GhAPm has a critical role in cotton membrane trafficking and fiber development.

DOI: 10.1007/s11033-010-0436-0
PubMed: 21225463

Affiliations:

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<front><div type="abstract" xml:lang="en">The clathrin-associated adaptor protein (AP) complexes are the primary clathrin adaptors that contribute to the formation of clathrin-coated vesicles (CCVs). The GhAPm gene (GenBank accession number: GU359054), which encodes the medium subunit of the AP complexes, was cloned from cotton by rapid amplification of cDNA ends-polymerase chain reaction (RACE-PCR). The full-length cDNA was 1590 bp in size and encoded an open reading frame (ORF) of 416 amino acids with a molecular weight of 46 kDa. The GhAPm protein shared 81-85% identity at the amino acid level with the AP complex μ subunits isolated from Vitis vinifera, Glycine max, Populus trichocarpa, Ricinus communis and Arabidopsis thaliana, respectively. The corresponding genomic DNA, containing eight exons and seven introns, was isolated and analyzed. Also, a 5'-flanking region was analyzed, and a group of putative cis-acting elements were identified. DNA gel blot analysis showed that there is only one GhAPm gene in the cotton genome. Real-time RT-PCR analysis revealed that GhAPm is expressed in the root, stem, leaf, petal, ovule, and fiber. However, the interesting finding is that GhAPm expression level was shown to increase steadily as the cotton fiber develops. In 30 DPA fibers, expression increases sharply and arrives at a peak then the expression levels decrease rapidly. Based on these data, we propose that GhAPm has a critical role in cotton membrane trafficking and fiber development.</div>
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<Abstract><AbstractText>The clathrin-associated adaptor protein (AP) complexes are the primary clathrin adaptors that contribute to the formation of clathrin-coated vesicles (CCVs). The GhAPm gene (GenBank accession number: GU359054), which encodes the medium subunit of the AP complexes, was cloned from cotton by rapid amplification of cDNA ends-polymerase chain reaction (RACE-PCR). The full-length cDNA was 1590 bp in size and encoded an open reading frame (ORF) of 416 amino acids with a molecular weight of 46 kDa. The GhAPm protein shared 81-85% identity at the amino acid level with the AP complex μ subunits isolated from Vitis vinifera, Glycine max, Populus trichocarpa, Ricinus communis and Arabidopsis thaliana, respectively. The corresponding genomic DNA, containing eight exons and seven introns, was isolated and analyzed. Also, a 5'-flanking region was analyzed, and a group of putative cis-acting elements were identified. DNA gel blot analysis showed that there is only one GhAPm gene in the cotton genome. Real-time RT-PCR analysis revealed that GhAPm is expressed in the root, stem, leaf, petal, ovule, and fiber. However, the interesting finding is that GhAPm expression level was shown to increase steadily as the cotton fiber develops. In 30 DPA fibers, expression increases sharply and arrives at a peak then the expression levels decrease rapidly. Based on these data, we propose that GhAPm has a critical role in cotton membrane trafficking and fiber development.</AbstractText>
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Molecular cloning and characterization of GhAPm, a gene encoding the μ subunit of the clathrin-associated adaptor protein complex that is associated with cotton (Gossypium hirsutum) fiber development.

Molecular cloning and characterization of GhAPm, a gene encoding the μ subunit of the clathrin-associated adaptor protein complex that is associated with cotton (Gossypium hirsutum) fiber development.

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